PathMe Viewer

A web application to merge and explore the mechanistic pathway knowledge. See our tutorial on how to get started.

Merge and Explore Pathways Across Multiple Databases

Below, you can select multiple pathways from different databases. To choose a pathway, first select a database and the autocompletion form will then guide you to find pathways of interest to you. After pathways have been selected, click on the "Explore" button to render the merged network corresponding to the selected pathways.

Examples: mTOR signaling pathway, MAPK signaling pathway

Explore Pathways Containing a Given Set of Nodes

Below, you can select BEL nodes (e.g., genes, compounds, miRNAs, etc.) and explore which set of pathways contain them.

Examples: MTOR (gene and protein), MAPK1 (gene and protein)

About

PathMe is developed and maintained in an academic capacity by Daniel Domingo-Fernández, Josep Marin Llaó, Sarah Mubeen, and Charles Tapley Hoyt at the Fraunhofer SCAI Department of Bioinformatics.